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- //
- //=======================================================================
- // Copyright 2007 Stanford University
- // Authors: David Gleich
- //
- // Distributed under the Boost Software License, Version 1.0. (See
- // accompanying file LICENSE_1_0.txt or copy at
- // http://www.boost.org/LICENSE_1_0.txt)
- //=======================================================================
- //
- #ifndef BOOST_GRAPH_CORE_NUMBERS_HPP
- #define BOOST_GRAPH_CORE_NUMBERS_HPP
- #include <boost/graph/detail/d_ary_heap.hpp>
- #include <boost/graph/breadth_first_search.hpp>
- #include <boost/iterator/reverse_iterator.hpp>
- #include <boost/concept/assert.hpp>
- /*
- * core_numbers
- *
- * Requirement: IncidenceGraph
- */
- // History
- //
- // 30 July 2007
- // Added visitors to the implementation
- //
- // 8 February 2008
- // Fixed headers and missing typename
- namespace boost
- {
- // A linear time O(m) algorithm to compute the indegree core number
- // of a graph for unweighted graphs.
- //
- // and a O((n+m) log n) algorithm to compute the in-edge-weight core
- // numbers of a weighted graph.
- //
- // The linear algorithm comes from:
- // Vladimir Batagelj and Matjaz Zaversnik, "An O(m) Algorithm for Cores
- // Decomposition of Networks." Sept. 1 2002.
- template < typename Visitor, typename Graph > struct CoreNumbersVisitorConcept
- {
- void constraints()
- {
- BOOST_CONCEPT_ASSERT((CopyConstructibleConcept< Visitor >));
- vis.examine_vertex(u, g);
- vis.finish_vertex(u, g);
- vis.examine_edge(e, g);
- }
- Visitor vis;
- Graph g;
- typename graph_traits< Graph >::vertex_descriptor u;
- typename graph_traits< Graph >::edge_descriptor e;
- };
- template < class Visitors = null_visitor >
- class core_numbers_visitor : public bfs_visitor< Visitors >
- {
- public:
- core_numbers_visitor() {}
- core_numbers_visitor(Visitors vis) : bfs_visitor< Visitors >(vis) {}
- private:
- template < class Vertex, class Graph >
- void initialize_vertex(Vertex, Graph&)
- {
- }
- template < class Vertex, class Graph > void discover_vertex(Vertex, Graph&)
- {
- }
- template < class Vertex, class Graph > void gray_target(Vertex, Graph&) {}
- template < class Vertex, class Graph > void black_target(Vertex, Graph&) {}
- template < class Edge, class Graph > void tree_edge(Edge, Graph&) {}
- template < class Edge, class Graph > void non_tree_edge(Edge, Graph&) {}
- };
- template < class Visitors >
- core_numbers_visitor< Visitors > make_core_numbers_visitor(Visitors vis)
- {
- return core_numbers_visitor< Visitors >(vis);
- }
- typedef core_numbers_visitor<> default_core_numbers_visitor;
- namespace detail
- {
- // implement a constant_property_map to simplify compute_in_degree
- // for the weighted and unweighted case
- // this is based on dummy property map
- template < typename ValueType >
- class constant_value_property_map
- : public boost::put_get_helper< ValueType,
- constant_value_property_map< ValueType > >
- {
- public:
- typedef void key_type;
- typedef ValueType value_type;
- typedef const ValueType& reference;
- typedef boost::readable_property_map_tag category;
- inline constant_value_property_map(ValueType cc) : c(cc) {}
- inline constant_value_property_map(
- const constant_value_property_map< ValueType >& x)
- : c(x.c)
- {
- }
- template < class Vertex > inline reference operator[](Vertex) const
- {
- return c;
- }
- protected:
- ValueType c;
- };
- // the core numbers start as the indegree or inweight. This function
- // will initialize these values
- template < typename Graph, typename CoreMap, typename EdgeWeightMap >
- void compute_in_degree_map(Graph& g, CoreMap d, EdgeWeightMap wm)
- {
- typename graph_traits< Graph >::vertex_iterator vi, vi_end;
- typename graph_traits< Graph >::out_edge_iterator ei, ei_end;
- for (boost::tie(vi, vi_end) = vertices(g); vi != vi_end; ++vi)
- {
- put(d, *vi, 0);
- }
- for (boost::tie(vi, vi_end) = vertices(g); vi != vi_end; ++vi)
- {
- for (boost::tie(ei, ei_end) = out_edges(*vi, g); ei != ei_end; ++ei)
- {
- put(d, target(*ei, g), get(d, target(*ei, g)) + get(wm, *ei));
- }
- }
- }
- // the version for weighted graphs is a little different
- template < typename Graph, typename CoreMap, typename EdgeWeightMap,
- typename MutableQueue, typename Visitor >
- typename property_traits< CoreMap >::value_type core_numbers_impl(
- Graph& g, CoreMap c, EdgeWeightMap wm, MutableQueue& Q, Visitor vis)
- {
- typename property_traits< CoreMap >::value_type v_cn = 0;
- typedef typename graph_traits< Graph >::vertex_descriptor vertex;
- while (!Q.empty())
- {
- // remove v from the Q, and then decrease the core numbers
- // of its successors
- vertex v = Q.top();
- vis.examine_vertex(v, g);
- Q.pop();
- v_cn = get(c, v);
- typename graph_traits< Graph >::out_edge_iterator oi, oi_end;
- for (boost::tie(oi, oi_end) = out_edges(v, g); oi != oi_end; ++oi)
- {
- vis.examine_edge(*oi, g);
- vertex u = target(*oi, g);
- // if c[u] > c[v], then u is still in the graph,
- if (get(c, u) > v_cn)
- {
- // remove the edge
- put(c, u, get(c, u) - get(wm, *oi));
- if (Q.contains(u))
- Q.update(u);
- }
- }
- vis.finish_vertex(v, g);
- }
- return (v_cn);
- }
- template < typename Graph, typename CoreMap, typename EdgeWeightMap,
- typename IndexMap, typename CoreNumVisitor >
- typename property_traits< CoreMap >::value_type core_numbers_dispatch(
- Graph& g, CoreMap c, EdgeWeightMap wm, IndexMap im, CoreNumVisitor vis)
- {
- typedef typename property_traits< CoreMap >::value_type D;
- typedef std::less< D > Cmp;
- // build the mutable queue
- typedef typename graph_traits< Graph >::vertex_descriptor vertex;
- std::vector< std::size_t > index_in_heap_data(num_vertices(g));
- typedef iterator_property_map< std::vector< std::size_t >::iterator,
- IndexMap >
- index_in_heap_map_type;
- index_in_heap_map_type index_in_heap_map(
- index_in_heap_data.begin(), im);
- typedef d_ary_heap_indirect< vertex, 4, index_in_heap_map_type, CoreMap,
- Cmp >
- MutableQueue;
- MutableQueue Q(c, index_in_heap_map, Cmp());
- typename graph_traits< Graph >::vertex_iterator vi, vi_end;
- for (boost::tie(vi, vi_end) = vertices(g); vi != vi_end; ++vi)
- {
- Q.push(*vi);
- }
- return core_numbers_impl(g, c, wm, Q, vis);
- }
- // the version for the unweighted case
- // for this functions CoreMap must be initialized
- // with the in degree of each vertex
- template < typename Graph, typename CoreMap, typename PositionMap,
- typename Visitor >
- typename property_traits< CoreMap >::value_type core_numbers_impl(
- Graph& g, CoreMap c, PositionMap pos, Visitor vis)
- {
- typedef typename graph_traits< Graph >::vertices_size_type size_type;
- typedef typename graph_traits< Graph >::degree_size_type degree_type;
- typedef typename graph_traits< Graph >::vertex_descriptor vertex;
- typename graph_traits< Graph >::vertex_iterator vi, vi_end;
- // store the vertex core numbers
- typename property_traits< CoreMap >::value_type v_cn = 0;
- // compute the maximum degree (degrees are in the coremap)
- typename graph_traits< Graph >::degree_size_type max_deg = 0;
- for (boost::tie(vi, vi_end) = vertices(g); vi != vi_end; ++vi)
- {
- max_deg = (std::max<
- typename graph_traits< Graph >::degree_size_type >)(max_deg,
- get(c, *vi));
- }
- // store the vertices in bins by their degree
- // allocate two extra locations to ease boundary cases
- std::vector< size_type > bin(max_deg + 2);
- for (boost::tie(vi, vi_end) = vertices(g); vi != vi_end; ++vi)
- {
- ++bin[get(c, *vi)];
- }
- // this loop sets bin[d] to the starting position of vertices
- // with degree d in the vert array for the bucket sort
- size_type cur_pos = 0;
- for (degree_type cur_deg = 0; cur_deg < max_deg + 2; ++cur_deg)
- {
- degree_type tmp = bin[cur_deg];
- bin[cur_deg] = cur_pos;
- cur_pos += tmp;
- }
- // perform the bucket sort with pos and vert so that
- // pos[0] is the vertex of smallest degree
- std::vector< vertex > vert(num_vertices(g));
- for (boost::tie(vi, vi_end) = vertices(g); vi != vi_end; ++vi)
- {
- vertex v = *vi;
- size_type p = bin[get(c, v)];
- put(pos, v, p);
- vert[p] = v;
- ++bin[get(c, v)];
- }
- // we ``abused'' bin while placing the vertices, now,
- // we need to restore it
- std::copy(boost::make_reverse_iterator(bin.end() - 2),
- boost::make_reverse_iterator(bin.begin()),
- boost::make_reverse_iterator(bin.end() - 1));
- // now simulate removing the vertices
- for (size_type i = 0; i < num_vertices(g); ++i)
- {
- vertex v = vert[i];
- vis.examine_vertex(v, g);
- v_cn = get(c, v);
- typename graph_traits< Graph >::out_edge_iterator oi, oi_end;
- for (boost::tie(oi, oi_end) = out_edges(v, g); oi != oi_end; ++oi)
- {
- vis.examine_edge(*oi, g);
- vertex u = target(*oi, g);
- // if c[u] > c[v], then u is still in the graph,
- if (get(c, u) > v_cn)
- {
- degree_type deg_u = get(c, u);
- degree_type pos_u = get(pos, u);
- // w is the first vertex with the same degree as u
- // (this is the resort operation!)
- degree_type pos_w = bin[deg_u];
- vertex w = vert[pos_w];
- if (u != v)
- {
- // swap u and w
- put(pos, u, pos_w);
- put(pos, w, pos_u);
- vert[pos_w] = u;
- vert[pos_u] = w;
- }
- // now, the vertices array is sorted assuming
- // we perform the following step
- // start the set of vertices with degree of u
- // one into the future (this now points at vertex
- // w which we swapped with u).
- ++bin[deg_u];
- // we are removing v from the graph, so u's degree
- // decreases
- put(c, u, get(c, u) - 1);
- }
- }
- vis.finish_vertex(v, g);
- }
- return v_cn;
- }
- } // namespace detail
- // non-named parameter version for the unweighted case
- template < typename Graph, typename CoreMap, typename CoreNumVisitor >
- typename property_traits< CoreMap >::value_type core_numbers(
- Graph& g, CoreMap c, CoreNumVisitor vis)
- {
- typedef typename graph_traits< Graph >::vertices_size_type size_type;
- detail::compute_in_degree_map(g, c,
- detail::constant_value_property_map<
- typename property_traits< CoreMap >::value_type >(1));
- return detail::core_numbers_impl(g, c,
- make_iterator_property_map(
- std::vector< size_type >(num_vertices(g)).begin(),
- get(vertex_index, g)),
- vis);
- }
- // non-named paramter version for the unweighted case
- template < typename Graph, typename CoreMap >
- typename property_traits< CoreMap >::value_type core_numbers(
- Graph& g, CoreMap c)
- {
- return core_numbers(g, c, make_core_numbers_visitor(null_visitor()));
- }
- // non-named parameter version for the weighted case
- template < typename Graph, typename CoreMap, typename EdgeWeightMap,
- typename VertexIndexMap, typename CoreNumVisitor >
- typename property_traits< CoreMap >::value_type core_numbers(Graph& g,
- CoreMap c, EdgeWeightMap wm, VertexIndexMap vim, CoreNumVisitor vis)
- {
- detail::compute_in_degree_map(g, c, wm);
- return detail::core_numbers_dispatch(g, c, wm, vim, vis);
- }
- // non-named parameter version for the weighted case
- // template <typename Graph, typename CoreMap, typename EdgeWeightMap>
- // typename property_traits<CoreMap>::value_type
- // core_numbers(Graph& g, CoreMap c, EdgeWeightMap wm)
- // {
- // typedef typename graph_traits<Graph>::vertices_size_type size_type;
- // detail::compute_in_degree_map(g,c,wm);
- // return detail::core_numbers_dispatch(g,c,wm,get(vertex_index,g),
- // make_core_numbers_visitor(null_visitor()));
- // }
- template < typename Graph, typename CoreMap >
- typename property_traits< CoreMap >::value_type weighted_core_numbers(
- Graph& g, CoreMap c)
- {
- return weighted_core_numbers(
- g, c, make_core_numbers_visitor(null_visitor()));
- }
- template < typename Graph, typename CoreMap, typename CoreNumVisitor >
- typename property_traits< CoreMap >::value_type weighted_core_numbers(
- Graph& g, CoreMap c, CoreNumVisitor vis)
- {
- return core_numbers(g, c, get(edge_weight, g), get(vertex_index, g), vis);
- }
- } // namespace boost
- #endif // BOOST_GRAPH_CORE_NUMBERS_HPP
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